Semantic Knowledge Modeling for Domain Experts in Pharma
Feb 13, 2023
Speakers
Irina Schmidt
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Sebastian Schmidt
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About
The FAIR data principles enable companies to make data reusable and human- and machine-actionable. More and more organizations from the Pharma and Life Sciences community are striving to apply these principles internally and to utilize publicly available data to advance R&D and other functions. One important aspect in this process is modeling domain expert knowledge – including the utilization of public knowledge in the form of ontologies and mapping this knowledge to internal terms, processes, use cases and needs. The process of knowledge modeling (or semantic modeling) to capture the meaning of data and ensure correct interpretation and usage is a key pillar to FAIR data. This process can only succeed if domain experts / SMEs can perform the modeling task without relying on ontologists or other experienced data modelers. In this tutorial, we will present an approach that supports this process and enables you, the domain expert, to model your respective domain. We will cover examples from R&D research and target discovery, including the use of public ontologies like Mondo or NCI, through clinical trial scoping and consent modeling, to manufacturing, supply chain management and market access. The session will include a mix of theoretical learning, best practices and hands-on modeling exercises to familiarize you with the concepts and give you a chance to apply this knowledge.The FAIR data principles enable companies to make data reusable and human- and machine-actionable. More and more organizations from the Pharma and Life Sciences community are striving to apply these principles internally and to utilize publicly available data to advance R&D and other functions. One important aspect in this process is modeling domain expert knowledge – including the utilization of public knowledge in the form of ontologies and mapping this knowledge to internal terms, proces…
About SWAT4HCLS
Since 2008, the SWAT4(HC)LS Workshop has provided a platform for the presentation and discussion of the benefits and limits of applying Web-based information systems and semantic technologies in the domains of health care and life sciences. Growing steadily each year as Semantic Web applications become more widespread, SWAT4LS has been in Edinburgh (2008), Amsterdam (2009), Berlin (2010), London (2011), Paris (2012), Aveiro (SWAT4LS School organized in 2012), Edinburgh (2013) and Berlin (2014). Since 2015, SWAT4LS changed format and has been organized as a 2 day conference, preceded by a tutorial day and followed by a hackathon day (Cambridge, 2015, and Amsterdam, 2016). SWAT4(HC)LS aims at providing an open and stimulating environment that brings together researchers, both developers and users, from areas as diverse as eHealth, medical and clinical informatics, bioinformatics, cheminformatics, drug discovery, drug safety, systems biology, medical physics, data science, and biocomputing, to discuss goals, current limits and real experiences in the application of Semantic Web and Linked Data technologies to challenges in health care and life sciences. The meetings are typically very interactive and are accompanied by tutorials and a hackathon.
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